Triple-X08,
Thank you so much for your response. Here is what I am doing.
I have a heavily modified 2004 Wrangler that I use on the weekend to go wheeling and rockcrawling with my family. Although it serves its purpose, I have never been a big fan of its powertrain, or all Mopar ones for that matter, so I am looking to swap in a GM powertrain. It would also help when pulling our camper.
Many people have done swaps before, but nobody I know has done a California legal swap. Many say it is impossible to pull off, however, I have talked to a referee for the past 4 months about the legalities and he is willing to work with me through this project.
The goal is to find an extremely low mileage powertrain, and to work with the referee and document everything on various forums, in order to show that it can legally be done. That way, there may be a few more converts to the GM side.
Those who have done these swaps have mostly used a Gen III engine and a 4L60 transmission, and they haven’t hooked up the emissions stuff. I have to use a 2004+ engine (passenger car or truck), and I plan on using an aluminum block, so the possibilities are LS1, LS2, LS3, L76, L98, LM4, L33, LH6, and L92 (nothing you guys already don't know

). I left out the LC9 since I am not sure if the Flex Fuel option would give me problems.
I would much rather go for an LS series for various reasons, but the cost seems prohibitive compared to the Vortec engines. So, one of the possibilities I have been pondering is the L92/6L80 combo, but I don’t know about the physical size (length/width/height) compared to a 4L60.
I have already talked to a few folks to understand some of the “challenges” of that project. For instance, GTO manifolds seem to work best to clear the frame rails and to avoid firewall modifications, a rear sump oil pan has to be used to clear the front axle, the AC compressor has to be relocated to avoid notching the frame, etc…
However, I plan on doing a few tricks ideas. I have talked to several companies and I have received some positive feedback so far.
Now, about the paddle shifters. When I bought the Jeep, my wife told me to make sure she could drive it, so that pretty much ruled out stick shifts.

So, the thing I have in mind is a “Tiptronic” like transmission. Stick it in Drive and it acts like a regular automatic (no activation of the paddles to prevent accidental use), but flip the shifter (or a switch) and the paddle shifters are activated.
I know TCI and Twist Machine have paddle setups, but they are not compatible with airbag equipped steering wheels. So, I did a bit of research and came across a Lincoln LS forum where the guys are using BMW SMG paddles(
http://www.lincolnvscadillac.com/tech/Lincoln-LS/paddle_shifts/ ). That’s the way I’d like to have it.
Another thing I'd like to do is to use the GTO instrument cluster. Is it possible to use it with any donor powertrain (read ECM) from the GM family?
BTW, I have kept an eye on ebay and car-part, but are there any other sources for a complete powertrain?